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ABSTRACT DNA double-strand breaks are repaired by homologous recombination or DNA end-joining, but the latter process often causes illegitimate recombination and chromosome rearrangements.
One of the factors involved in the end-joining process is Hdf1, a yeast homologue of Ku protein1,2,3,4. We used the yeast two-hybrid assay to show that Hdf1 interacts with Sir4, which is
involved in transcriptional silencing at telomeres and _HM_ loci5,6. Analyses of _sir4_ mutants showed that Sir4 is required for deletion by illegitimate recombination and DNA end-joining in
the pathway involving Hdf1. Sir2 and Sir3, but not Sir1, were also found to participate in these processes. Furthermore, mutations of the _SIR2_, _SIR3_ and _SIR4_ genes conferred increased
sensitivity to γ-radiation in a genetic background with a mutation of the _RAD52_ gene, which is essential for double-strand break repair mediated by homologous recombination. These results
indicate that Sir proteins are involved in double-strand break repair mediated by end-joining. We propose that Sir proteins act with Hdf1 to alter broken DNA ends to create an inactivated
chromatin structure that is essential for the rejoining of DNA ends. Access through your institution Buy or subscribe This is a preview of subscription content, access via your institution
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MECHANISMS Article Open access 22 August 2024 THE IMPORTANCE OF DNAPKCS FOR BLUNT DNA END JOINING IS MAGNIFIED WHEN XLF IS WEAKENED Article Open access 27 June 2022 WIDESPREAD CHROMATIN
CONTEXT-DEPENDENCIES OF DNA DOUBLE-STRAND BREAK REPAIR PROTEINS Article Open access 22 June 2024 REFERENCES * Tsukamoto, Y., Kato, J. & Ikeda, H. Hdf1, a yeast Ku-protein homologue, is
involved in illegitimate recombination, but not in homologous recombination. _Nucleic Acids Res._ 24, 2067–2072 (1996). Google Scholar * Tsukamoto, Y., Kato, J. & Ikeda, H. Budding
yeast Rad50, Mre11, Xrs2, and Hdf1, but not Rad52, are involved in formation of deletion mutation on a dicentric plasmid. _Mol. Gen. Genet._(in the press). * Milne, G. T., Jin, S., Shannon,
K. B. & Weaver, D. T. Mutations in two Ku homologs define a DNA end-joining repair pathway in _Saccharomyces cerevisiae_. _Mol. Cell Biol._ 16, 4189–4198 (1996). Google Scholar *
Boulton, S. J. & Jackson, S. P. _Saccharomyces cerevisiae_ Ku70 potentiates illegitimate DNA double-strand break repair and serves as a barrier to error-prone DNA repair pathways. _EMBO
J._ 15, 5093–5103 (1996). Google Scholar * Laurenson, P. & Rine, J. Silencers, silencing, and heritable transcriptional states. _Microbiol. Rev._ 56, 543–560 (1992). Google Scholar *
Shore, D. in _Telomeres_(eds Blackburn, E. H. & Greider, C. W.) 139–191 (Cold Spring Harbor Laboratory Press, NY, (1995)). Google Scholar * Tsukamoto, Y., Kato, J. & Ikeda, H.
Effects of mutations of _RAD50_, _RAD51_, _RAD52_, and related genes on illegitimate recombination in _Saccharomyces cerevisiae_. _Genetics_ 142, 383–391 (1996). Google Scholar * Feldmann,
H. & Winnacker, E. L. Aputative homologue of the human autoantigen Ku from _Saccharomyces cerevisiae_. _J. Biol. Chem._ 268, 12895–12900 (1993). Google Scholar * Weaver, D. T. What to
do at an end: DNA double-strand-break repair. _Trends Genet._ 11, 388–392 (1995). Google Scholar * Boulton, S. J. & Jackson, S. P. Identification of a _Saccharomyces cerevisiae_ Ku80
homologue: roles in DNA double strand break rejoining and in telomeric maintenance. _Nucleic Acids Res._ 24, 4639–4648 (1996). Google Scholar * Siede, W., Friedl, A. A., Dianova, I.,
Eckardt-Schupp, F. & Friedberg, E. C. The _Saccharomyces cerevisiae_ Ku autoantigen homologue affects radiosensitivity only in the absence of homologous recombination. _Genetics_ 142,
91–102 (1996). Google Scholar * Liang, F., Romanienko, P. J., Weaver, D. T., Jeggo, P. A. & Jasin, M. Chromosomal double-strand break repair in Ku80-deficient cells. _Proc. Natl Acad.
Sci. USA_ 93, 8929–8933 (1996). Google Scholar * Chien, C. T., Bartel, P. L., Sternglanz, R. & Fields, S. The two-hybrid system: a method to identify and clone genes for proteins that
interact with a protein of interest. _Proc. Natl Acad. Sci. USA_ 88, 9578–9582 (1991). Google Scholar * Sikorski, R. S. & Hieter, P. Asystem of shuttle vectors and yeast host strains
designed for efficient manipulation of DNA in _Saccharomyces cerevisiae_. _Genetics_ 122, 19–27 (1989). Google Scholar * Broach, J. R., Strathern, J. N. & Hicks, J. B. Transformation in
yeast: development of a hybrid cloning vector and isolation of the _CAN1_ gene. _Gene_ 8, 121–133 (1979). Google Scholar * Petes, T. D., Malone, R. E. & Symington, L. S. in _The
molecular and Cellular Biology of the Yeast Saccharomyces. Genome Dynamics, Protein Synthesis, and Energetics_ VOL. 1(eds Broach, J. R., Pringle, J. R. & Jones, E. W.) 407–521 (Cold
Spring Harbor Laboratory Press, NY, (1991)). Google Scholar * Pilus, L. & Rine, J. Epigenetic inheritance of transcriptional states in _S. cerevisiae_. _Cell_ 59, 637–647 (1989). Google
Scholar * Aparicio, O. M., Billington, B. L. & Gottschling, D. E. Modifiers of position effect are shared between telomeric and silent mating-type loci in _S. cerevisiae_. _Cell_ 66,
1279–1287 (1991). Google Scholar * Moazed, D. & Johnson, D. Adeubiquitinating enzyme interacts with SIR4 and regulates silencing in _S. cerevisiae_. _Cell_ 86, 667–677 (1996). Google
Scholar * Moretti, P., Freeman, K., Coodly, L. & Shore, D. Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1. _Genes Dev._ 8,
2257–2269 (1994). Google Scholar * Palladino, F._et al_. SIR3 and SIR4 proteins are required for the positioning and integrity of yeast telomeres. _Cell_ 75, 543–555 (1993). Google Scholar
* Porter, S. E., Greenwell, P. W., Ritchie, K. B. & Petes, T. D. The DNA-binding protein Hdf1p (a putative Ku homologue) is required for maintaining normal telomere length in
_Saccharomyces cerevisiae_. _Nucleic Acids Res._ 24, 582–585 (1996). Google Scholar * Sussel, L. & Shore, D. Separation of transcriptional activation and silencing functions of the
_RAP1_-encoded repressor/activator protein 1: isolation of viable mutants affecting both silencing and telomere length. _Proc. Natl Acad. Sci. USA_ 88, 7749–7753 (1991). Google Scholar *
Buck, S. W. & Shore, D. Action of a RAP1 carboxy-terminal silencing domain reveals an underlying competition between _HMR_ and telomeres in yeast. _Genes Dev._ 9, 370–384 (1995). Google
Scholar * Rothstein, R. J. One-step gene disruption in yeast. _Methods Enzymol._ 101, 202–211 (1983). Google Scholar * Thomas, B. J. & Rothstein, R. Elevated recombination rates in
transcriptionally active DNA. _Cell_ 56, 619–630 (1989). Google Scholar * Hollenberg, S. M., Sternglanz, R., Cheng, P. F. & Weintraub, H. Identification of a new family of
tissue-specific basic helix-loop-helix proteins with a two-hybrid system. _Mol. Cell. Biol._ 15, 3813–3822 (1995). Google Scholar * Rose, M. D., Winston, F. & Hieter, P. _Methods in
Yeast Genetics, a Laboratory Course Manual_(Cold Spring Harbor Laboratory Press, NY, (1990)). Google Scholar * Luria, S. E. & Delbruck, M. Mutations of bacteria from virus sensitivity
to virus resistance. _Genetics_ 28, 491–511 (1943). Google Scholar * Lea, D. E. & Coulson, C. A. The distribution of the numbers of mutants in bacterial populations. _J. Genet._ 49,
264–285 (1948). Google Scholar Download references ACKNOWLEDGEMENTS We thank S. Fields, S. M. Hollenberg, K. Johzuka, I. Kobayashi, A. Miyajima, J. Rine and J. W. Szostak for providing
plasmids and strains, and K. Johzuka for advice on the two-hybrid assay. This work was supported in part by grants to Y.T., J.K. and H.I. from the Ministry of Education, Science, Sports, and
Culture of Japan. Y.T. was supported by a postdoctoral fellowship of the Japan Society for the Promotion of Science. AUTHOR INFORMATION AUTHORS AND AFFILIATIONS * Department of Molecular
Biology, Institute of Medical Science, University of Tokyo, P.O. Takanawa, Tokyo, 108, Japan Yasumasa Tsukamoto, Jun-ichi Kato & Hideo Ikeda Authors * Yasumasa Tsukamoto View author
publications You can also search for this author inPubMed Google Scholar * Jun-ichi Kato View author publications You can also search for this author inPubMed Google Scholar * Hideo Ikeda
View author publications You can also search for this author inPubMed Google Scholar CORRESPONDING AUTHOR Correspondence to Hideo Ikeda. RIGHTS AND PERMISSIONS Reprints and permissions ABOUT
THIS ARTICLE CITE THIS ARTICLE Tsukamoto, Y., Kato, Ji. & Ikeda, H. Silencing factors participate in DNA repair and recombination in _Saccharomyces cerevisiae_. _Nature_ 388, 900–903
(1997). https://doi.org/10.1038/42288 Download citation * Received: 25 March 1997 * Accepted: 12 June 1997 * Issue Date: 28 August 1997 * DOI: https://doi.org/10.1038/42288 SHARE THIS
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