Ntrk1 fusions identified by non-invasive plasma next-generation sequencing (ngs) across 9 cancer types

Ntrk1 fusions identified by non-invasive plasma next-generation sequencing (ngs) across 9 cancer types

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ABSTRACT BACKGROUND Activating fusions of the _NTRK1_, _NTRK2_ and _NTRK3_ genes are drivers of carcinogenesis and proliferation across a broad range of tumour types in both adult and


paediatric patients. Recently, the FDA granted tumour-agnostic approvals of TRK inhibitors, larotrectinib and entrectinib, based on significant and durable responses in multiple primary


tumour types. Unfortunately, testing rates in clinical practice remain quite low. Adding plasma next-generation sequencing of circulating tumour DNA (ctDNA) to tissue-based testing increases


the detection rate of oncogenic drivers and demonstrates high concordance with tissue genotyping. However, the clinical potential of ctDNA analysis to identify _NTRK_ fusion-positive


tumours has been largely unexplored. METHODS We retrospectively reviewed a ctDNA database in advanced stage solid tumours for _NTRK1_ fusions. RESULTS _NTRK1_ fusion events, with nine unique


fusion partners, were identified in 37 patients. Of the cases for which clinical data were available, 44% had tissue testing for _NTRK1_ fusions; the _NTRK1_ fusion detected by ctDNA was


confirmed in tissue in 88% of cases. Here, we report for the first time that minimally-invasive plasma NGS can detect _NTRK_ fusions with a high positive predictive value. CONCLUSION Plasma


ctDNA represents a rapid, non-invasive screening method for this rare genomic target that may improve identification of patients who can benefit from TRK-targeted therapy and potentially


identify subsequent on- and off-target resistance mechanisms. Access through your institution Buy or subscribe This is a preview of subscription content, access via your institution ACCESS


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institutional subscriptions * Read our FAQs * Contact customer support SIMILAR CONTENT BEING VIEWED BY OTHERS CIRCULATING TUMOUR MUTATION DETECTION IN TRIPLE-NEGATIVE BREAST CANCER AS AN


ADJUNCT TO TISSUE RESPONSE ASSESSMENT Article Open access 05 January 2024 GENOMIC ANALYSIS OF PLASMA CIRCULATING TUMOR DNA IN PATIENTS WITH HEAVILY PRETREATED HER2 + METASTATIC BREAST CANCER


Article Open access 19 June 2023 MUTATIONAL PROFILING USING LIQUID BIOPSY TO GUIDE TARGETED THERAPY IN PATIENTS WITH METASTATIC CANCER Article Open access 01 April 2025 REFERENCES * Cocco


E, Scaltriti M, Drilon A. NTRK fusion-positive cancers and TRK inhibitor therapy. Nat Rev Clin Oncol. 2018;15:731–47. https://doi.org/10.1038/s41571-018-0113-0. Article  CAS  PubMed  PubMed


Central  Google Scholar  * Drilon A, Laetsch TW, Kummar S, DuBois SG, Lassen UN, Demetri GD, et al. Efficacy of larotrectinib in TRK fusion-positive cancers in adults and children. N Engl J


Med. 2018;378:731–9. https://doi.org/10.1056/NEJMoa1714448. Article  CAS  PubMed  PubMed Central  Google Scholar  * Rolfo C. NTRK gene fusions: a rough diamond ready to sparkle. Lancet


Oncol. 2020;21:472–4. https://doi.org/10.1016/S1470-2045(20)30026-7. Article  CAS  PubMed  Google Scholar  * Russo A, Lopes AR, Scilla K, Mehra R, Adamo V, Oliveira J, et al. NTRK and NRG1


gene fusions in advanced non-small cell lung cancer (NSCLC). Precis Can Med. 2020;3:14. * Heitzer E, Haque IS, Roberts CES, Speicher MR. Current and future perspectives of liquid biopsies in


genomics-driven oncology. Nat Rev Genet. 2019;20:71–88. https://doi.org/10.1038/s41576-018-0071-5. Article  CAS  PubMed  Google Scholar  * Rolfo C, Cardona AF, Cristofanilli M, Paz-Ares L,


Diaz Mochon JJ, Duran I, et al. Challenges and opportunities of cfDNA analysis implementation in clinical practice: perspective of the International Society of Liquid Biopsy (ISLB). Crit Rev


Oncol Hematol. 2020;151:102978. https://doi.org/10.1016/j.critrevonc.2020.102978. Article  PubMed  Google Scholar  * Odegaard JI, Vincent JJ, Mortimer S, Vowles JV, Ulrich BC, Banks KC, et


al. Validation of a plasma-based comprehensive cancer genotyping assay utilizing orthogonal tissue- and plasma-based methodologies. Clin Cancer Res. 2018;24:3539–49.


https://doi.org/10.1158/1078-0432.CCR-17-3831. Article  CAS  PubMed  Google Scholar  * Clark TA, Chung JH, Kennedy M, Hughes JD, Chennagiri N, Lieber DS, et al. Analytical validation of a


hybrid capture-based next-generation sequencing clinical assay for genomic profiling of cell-free circulating tumor DNA. J Mol Diagn. 2018;20:686–702.


https://doi.org/10.1016/j.jmoldx.2018.05.004. Article  CAS  PubMed  PubMed Central  Google Scholar  * Westphalen CB, Krebs MG, Le Tourneau C, Sokol ES, Maund SL, Wilson TR, et al. Genomic


context of NTRK1/2/3 fusion-positive tumours from a large real-world population. NPJ Precis Oncol. 2021;5:69. https://doi.org/10.1038/s41698-021-00206-y. Article  CAS  PubMed  PubMed Central


  Google Scholar  * Marchiò C, Scaltriti M, Ladanyi M, Iafrate AJ, Bibeau F, Dietel M, et al. ESMO recommendations on the standard methods to detect NTRK fusions in daily practice and


clinical research. Ann Oncol. 2019;30:1417–27. https://doi.org/10.1093/annonc/mdz204. Article  PubMed  Google Scholar  * Russo A, De Miguel Perez D, Gunasekaran M, Scilla K, Lapidus R,


Cooper B, et al. Liquid biopsy tracking of lung tumor evolutions over time. Expert Rev Mol Diagn. 2019;19:1099–108. https://doi.org/10.1080/14737159.2020.1680287. Article  CAS  PubMed 


Google Scholar  * Gerratana L, Zhang Q, Shah AN, Davis AA, Zhang Y, Wehbe F, et al. Performance of a novel Next Generation Sequencing circulating tumor DNA (ctDNA) platform for the


evaluation of samples from patients with metastatic breast cancer (MBC). Crit Rev Oncol Hematol. 2020;145:102856. https://doi.org/10.1016/j.critrevonc.2019.102856. Article  PubMed  Google


Scholar  * Rolfo C, Mack PC, Scagliotti GV, Baas P, Barlesi F, Bivona TG, et al. Liquid biopsy for advanced non-small cell lung cancer (NSCLC): a statement paper from the IASLC. J Thorac


Oncol. 2018;13:1248–68. https://doi.org/10.1016/j.jtho.2018.05.030. Article  PubMed  Google Scholar  * Leighl NB, Page RD, Raymond VM, Daniel DB, Divers SG, Reckamp KL, et al. Clinical


utility of comprehensive cell-free DNA analysis to identify genomic biomarkers in patients with newly diagnosed metastatic non-small cell lung cancer. Clin Cancer Res. 2019;25:4691–700.


https://doi.org/10.1158/1078-0432.CCR-19-0624. Article  CAS  PubMed  Google Scholar  * Remon J, Lacroix L, Jovelet C, Caramella C, Howarth K, Plagnol V, et al. Real-world utility of an


amplicon-based next-generation sequencing liquid biopsy for broad molecular profiling in patients with advanced non-small-cell lung cancer. JCO Precis Oncol. 2019;3:


https://doi.org/10.1200/PO.18.00211. * Mack PC, Banks KC, Espenschied CR, Burich RA, Zill OA, Lee CE, et al. Spectrum of driver mutations and clinical impact of circulating tumor DNA


analysis in non-small cell lung cancer: Analysis of over 8000 cases. Cancer. 2020;126:3219–28. https://doi.org/10.1002/cncr.32876. Article  CAS  PubMed  Google Scholar  * Strickler JH, Loree


JM, Ahronian LG, Parikh AR, Niedzwiecki D, Pereira AAL, et al. Genomic landscape of cell-free DNA in patients with colorectal cancer. Cancer Disco. 2018;8:164–73.


https://doi.org/10.1158/2159-8290.CD-17-1009. Article  CAS  Google Scholar  * Rich TA, Reckamp KL, Chae YK, Doebele RC, Iams WT, Oh M, et al. Analysis of cell-free DNA from 32,989 advanced


cancers reveals novel co-occurring activating RET alterations and oncogenic signaling pathway aberrations. Clin Cancer Res. 2019;25:5832–42. https://doi.org/10.1158/1078-0432.CCR-18-4049.


Article  CAS  PubMed  PubMed Central  Google Scholar  * Rolfo C, Mack P, Scagliotti GV, Aggarwal C, Arcila ME, Barlesi F, et al. Liquid biopsy for advanced non-small cell lung cancer: a


consensus statement from The International Association for the Study of Lung Cancer (IASLC). J Thorac Oncol. 2021; https://doi.org/10.1016/j.jtho.2021.06.017. * Xia H, Xue X, Ding H, Ou Q,


Wu X, Nagasaka M, et al. Evidence of NTRK1 fusion as resistance mechanism to EGFR TKI in EGFR+ NSCLC: results from a large-scale survey of NTRK1 fusions in chinese patients with lung cancer.


Clin Lung Cancer. 2020;21:247–54. https://doi.org/10.1016/j.cllc.2019.09.004. Article  CAS  PubMed  Google Scholar  * Piotrowska Z, Isozaki H, Lennerz JK, Gainor JF, Lennes IT, Zhu VW, et


al. Landscape of acquired resistance to osimertinib in EGFR-mutant NSCLC and clinical validation of combined EGFR and RET inhibition with osimertinib and BLU-667 for acquired RET fusion.


Cancer Disco. 2018;8:1529–39. https://doi.org/10.1158/2159-8290.CD-18-1022. Article  CAS  Google Scholar  * Cocco E, Lee JE, Kannan S, Schram AM, Won HH, Shifman S, et al. TRK xDFG Mutations


trigger a sensitivity switch from type I to II kinase inhibitors. Cancer Discov. 2020, https://doi.org/10.1158/2159-8290.CD-20-0571. * Doebele RC. Acquired Resistance Is Oncogene and Drug


Agnostic. Cancer Cell. 2019;36:347–9. https://doi.org/10.1016/j.ccell.2019.09.011. Article  CAS  PubMed  PubMed Central  Google Scholar  * Cocco E, Schram AM, Kulick A, Misale S, Won HH,


Yaeger R, et al. Resistance to TRK inhibition mediated by convergent MAPK pathway activation. Nat Med. 2019;25:1422–7. https://doi.org/10.1038/s41591-019-0542-z. Article  CAS  PubMed  PubMed


Central  Google Scholar  Download references ACKNOWLEDGEMENTS Not applicable. AUTHOR INFORMATION AUTHORS AND AFFILIATIONS * Center for Thoracic Oncology, Tisch Cancer Institute, Mount Sinai


System & Icahn School of Medicine, Mount Sinai, New York, NY, USA Christian Rolfo * Memorial Sloan Kettering Cancer Center, New York, NY, USA Alexander Drilon & Alison M. Schram *


Department of Investigational Cancer Therapeutics, Division of Cancer Medicine, University of Texas M.D. Anderson Cancer Center, Houston, TX, USA David Hong * University of California, San


Francisco, CA, USA Caroline McCoach * Genentech, South San Francisco, CA, USA Caroline McCoach * University Hospitals Cleveland Medical Center, Cleveland, OH, USA Afshin Dowlati & Timmy


Nguyen * Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, MA, USA Jessica J. Lin, Neelima Vidula & Aditya Bardia * Thoracic Oncology & Experimental


Therapeutics Program, Greenebaum Comprehensive Cancer Center, University of Maryland School of Medicine, Baltimore, MD, USA Alessandro Russo * Lombardi Comprehensive Cancer Center,


Georgetown University, Washington, DC, USA Stephen V. Liu * Keck School of Medicine of USC, Section Head – Solid Tumors, USC/Norris Cancer Center, Los Angeles, CA, USA Jorge J. Nieva * James


R. Berenson, MD, Inc., West Hollywood, CA, USA Shahrooz Eshaghian * Duke Cancer Institute, Division of Medical Oncology, Durham, NC, USA Michael Morse & Thomas Stinchcombe * Yale


Comprehensive Cancer Center, New Haven, CT, USA Scott Gettinger & Sarah Goldberg * ProMedica Bay Park Hospital Cancer, Sylvania, OH, USA Mohammad Mobayed * Kymera Cancer Center and


University of New Mexico, Roswell, NM, USA Emilio Araujo-Mino * Saint Lukes Cancer Institute/University of Missouri, Kansas City, MO, USA Janakiraman Subramanian * US Oncology Network, Texas


Oncology, Baytown, TX, USA Deepa Sashital * Guardant Health, Redwood City, CA, USA Lesli Kiedrowski & Kristin Price * UC Davis Comprehensive Cancer Center, Sacramento, CA, USA David R.


Gandara Authors * Christian Rolfo View author publications You can also search for this author inPubMed Google Scholar * Alexander Drilon View author publications You can also search for


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author publications You can also search for this author inPubMed Google Scholar * Neelima Vidula View author publications You can also search for this author inPubMed Google Scholar * Aditya


Bardia View author publications You can also search for this author inPubMed Google Scholar * Janakiraman Subramanian View author publications You can also search for this author inPubMed 


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also search for this author inPubMed Google Scholar * David R. Gandara View author publications You can also search for this author inPubMed Google Scholar CONTRIBUTIONS CR, LK, KP and DRG


conceived the work; LK and KP acquired data; AD, JJL, AMS, LK and KP provided detailed cases information and materials; CR, AR, LK, KP and DRG drafted the manuscript and analysed the data;


all the co-authors revised the manuscript. All the co-authors approved the final version. CORRESPONDING AUTHOR Correspondence to Christian Rolfo. ETHICS DECLARATIONS ETHICS APPROVAL AND


CONSENT TO PARTICIPATE This research was conducted in accordance with the Declaration of Helsinki. Institutional Review Board approval (Advarra IRB Pro00034566/CR00218935) waived the need


for individual informed consent for use of deidentified aggregate data for research purposes. CONSENT TO PUBLISH Not applicable. COMPETING INTERESTS Dr. Rolfo reports grants for Lung Cancer


Research Foundation-Pfizer Grant 2019 NHI U54 grant (Project co-leader); He has received personal fees for attending advisory board with Inivata, ArcherDx, EMD Serono, BMS, Novartis, Boston


Pharmaceuticals, Pfizer, Mirati, and Eisai; fee for speaking bureau: MSD, Astra Zeneca, Roche, and GuardantHealth; Participation in Safety Monitoring Board for EMD Serono Non-financial


conflict included research collaboration: GuardantHealth. Dr. Drilon reports Honoraria/Advisory Boards from Ignyta/Genentech/Roche, Loxo/Bayer/Lilly, Takeda/Ariad/Millenium, TP Therapeutics,


AstraZeneca, Pfizer, Blueprint Medicines, Helsinn, Beigene, BergenBio, Hengrui Therapeutics, Exelixis, Tyra Biosciences, Verastem, MORE Health, Abbvie, 14ner/Elevation Oncology, Remedica


Ltd., ArcherDX, Monopteros, Novartis, EMD Serono, Melendi, Liberum, Repare RX; Associated Research to Institution from Pfizer, Exelixis, GlaxoSmithKlein, Teva, Taiho, PharmaMar; Royalties


from Wolters Kluwer; Other from Merck, Puma, Merus, Boehringer Ingelheim. Dr. Russo reports consultancy for Astra Zeneca, MSD, and Novartis outside the submitted work. Dr. Stinchcombe


reports personal fees from Takeda, AstraZeneca, Genentech/Roche, Foundation Medicine, Pfizer, EMD Serono, Novartis, Daiichi Sankyo, Lilly, Medtronic, Puma Biotechnology, Janssen Oncology,


Regeneron, non-financial support from Genentech/Roche, Blueprint Medicines, AstraZeneca, Takeda, Advaxis, Regeneron, outside the submitted work. Dr. Vidula reports institutional research


funding from Radius, Merck, Daehwa, Pfizer (and travel), and Novartis; advisory board from AbbVie; Dr. Price is an employee and stock holder of Guardant Health. ADDITIONAL INFORMATION


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al._ _NTRK1_ Fusions identified by non-invasive plasma next-generation sequencing (NGS) across 9 cancer types. _Br J Cancer_ 126, 514–520 (2022). https://doi.org/10.1038/s41416-021-01536-1


Download citation * Received: 25 April 2021 * Revised: 10 August 2021 * Accepted: 20 August 2021 * Published: 03 September 2021 * Issue Date: 01 February 2022 * DOI:


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