A retrospective analysis of vitamin b6 deficiency and associated changes of gut microbes in crohn’s disease

A retrospective analysis of vitamin b6 deficiency and associated changes of gut microbes in crohn’s disease

Play all audios:

Loading...

ABSTRACT BACKGROUND Patients with inflammatory bowel diseases (IBD) are at risk of micronutrient deficiencies, particularly during flares. Vitamin B6 is required for the proper development


of brain, nerves, and many other parts of the body. However, limited studies are available to describe the prevalence, relevance and consequences of vitamin B6 deficiencies in IBD. We aim to


estimate the prevalence of vitamin B6 deficiencies in Crohn’s disease (CD) patients, to identify associated risk factors and to explore the alteration of intestinal microbiota related to


vitamin B6 status. METHODS A total of 360 CD patients and 55 ulcerative colitis (UC) patients from Shanghai Tenth People’s Hospital of Tongji University were included. Serum vitamin B6


concentrations were collected from the computerized laboratory data. The logistic regression was used for statistical analysis. Fecal-associated microbiota was also analyzed using 16S rRNA


sequencing in another 20 CD patients (10 of vitamin B6 normal, 10 of vitamin B6 deficiency). RESULTS The prevalence of vitamin B6 abnormality was significantly higher in CD than in UC


patients. Logistic regression analysis showed that small bowel lesion, ileocolonic lesion (L3), extraintestinal manifestations, ileal resection, and usage of immunosuppressor were


independently associated with abnormal vitamin B6 in CD. Interestingly, the microbial structure presented significant differences between two CD groups. PICRUSt2 prediction revealed that


some enzymes and metabolic pathways between the two groups were significantly different. CONCLUSIONS Collectively, our analysis showed that vitamin B6 reduction occurred frequently in


patients with CD and affected the intestinal flora of patients. Access through your institution Buy or subscribe This is a preview of subscription content, access via your institution ACCESS


OPTIONS Access through your institution Subscribe to this journal Receive 12 print issues and online access $259.00 per year only $21.58 per issue Learn more Buy this article * Purchase on


SpringerLink * Instant access to full article PDF Buy now Prices may be subject to local taxes which are calculated during checkout ADDITIONAL ACCESS OPTIONS: * Log in * Learn about


institutional subscriptions * Read our FAQs * Contact customer support SIMILAR CONTENT BEING VIEWED BY OTHERS EVALUATION OF CHANGES IN INTESTINAL MICROBIOTA IN CROHN’S DISEASE PATIENTS AFTER


ANTI-TNF ALPHA TREATMENT Article Open access 11 May 2021 HIGH PREVALENCE OF VITAMIN D DEFICIENCY IN TAIWANESE PATIENTS WITH INFLAMMATORY BOWEL DISEASE Article Open access 18 June 2024


DYSBIOSIS OF GUT MICROBIOTA IN POLISH PATIENTS WITH ULCERATIVE COLITIS: A PILOT STUDY Article Open access 25 January 2021 DATA AVAILABILITY The 16S rRNA sequencing raw data has been


deposited in the NCBI’s Sequence Read Archive database (BioProject: PRJNA867573). REFERENCES * Mooney S, Leuendorf JE, Hendrickson C, Hellmann H. Vitamin B6: a long known compound of


surprising complexity. Molecules. 2009;14:329–51. https://doi.org/10.3390/molecules14010329. Article  CAS  PubMed  Google Scholar  * Saibeni S, Cattaneo M, Vecchi M, Zighetti ML, Lecchi A,


Lombardi R, et al. Low vitamin B6 plasma levels, a risk factor for thrombosis, in inflammatory bowel disease: role of inflammation and correlation with acute phase reactants. Am J


Gastroenterol. 2003;98:112–7. https://doi.org/10.1111/j.1572-0241.2003.07160.x. Article  CAS  PubMed  Google Scholar  * Mittenhuber G. Phylogenetic analyses and comparative genomics of


vitamin B6 (pyridoxine) and pyridoxal phosphate biosynthesis pathways. J Mol Microbiol Biotechnol. 2001;3:1–20. CAS  PubMed  Google Scholar  * Tanaka T, Tateno Y, Gojobori T. Evolution of


vitamin B6 (pyridoxine) metabolism by gain and loss of genes. Mol Biol Evol. 2005;22:243–50. https://doi.org/10.1093/molbev/msi011. Article  CAS  PubMed  Google Scholar  * Friso S, Jacques


PF, Wilson PW, Rosenberg IH, Selhub J. Low circulating vitamin B6 is associated with elevation of the inflammation marker C-reactive protein independently of plasma homocysteine levels.


Circulation. 2001;103:2788–91. https://doi.org/10.1161/01.cir.103.23.2788. Article  CAS  PubMed  Google Scholar  * Roubenoff R, Roubenoff RA, Selhub J, Nadeau MR, Cannon JG, Freeman LM, et


al. Abnormal vitamin B6 status in rheumatoid cachexia. Association with spontaneous tumor necrosis factor alpha production and markers of inflammation. Arthritis Rheum. 1995;38:105–9.


https://doi.org/10.1002/art.1780380116. Article  CAS  PubMed  Google Scholar  * Massé PG, Boudreau J, Tranchant CC, Ouellette R, Ericson KL. Type 1 diabetes impairs vitamin B6 metabolism at


an early stage of women’s adulthood. Appl Physiol Nutr Metab. 2012;37:167–75. https://doi.org/10.1139/h11-146. Article  PubMed  Google Scholar  * Torres J, Mehandru S, Colombel JF,


Peyrin-Biroulet L. Crohn’s disease. Lancet. 2017;389:1741–55. https://doi.org/10.1016/s0140-6736(16)31711-1. Article  PubMed  Google Scholar  * Massironi S, Rossi RE, Cavalcoli FA, Della


Valle S, Fraquelli M, Conte D. Nutritional deficiencies in inflammatory bowel disease: therapeutic approaches. Clin Nutr. 2013;32:904–10. https://doi.org/10.1016/j.clnu.2013.03.020. Article


  CAS  PubMed  Google Scholar  * Vagianos K, Bector S, McConnell J, Bernstein CN. Nutrition assessment of patients with inflammatory bowel disease. JPEN J Parenter Enter Nutr. 2007;31:311–9.


https://doi.org/10.1177/0148607107031004311. Article  CAS  Google Scholar  * Kuroki F, Iida M, Tominaga M, Matsumoto T, Hirakawa K, Sugiyama S, et al. Multiple vitamin status in Crohn’s


disease. Correlation with disease activity. Dig Dis Sci. 1993;38:1614–8. https://doi.org/10.1007/bf01303168. Article  CAS  PubMed  Google Scholar  * Amir A, McDonald D, Navas-Molina JA,


Kopylova E, Morton JT, Zech Xu Z, et al. Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems. 2017;2. https://doi.org/10.1128/mSystems.00191-16. * Quast C,


Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41:D590–6.


https://doi.org/10.1093/nar/gks1219. Article  CAS  PubMed  Google Scholar  * Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. Introducing mothur: open-source,


platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009;75:7537–41. https://doi.org/10.1128/aem.01541-09. Article


  CAS  PubMed  PubMed Central  Google Scholar  * Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community


sequencing data. Nat Methods. 2010;7:335–6. https://doi.org/10.1038/nmeth.f.303. Article  CAS  PubMed  PubMed Central  Google Scholar  * Lozupone CA, Hamady M, Kelley ST, Knight R.


Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol. 2007;73:1576–85.


https://doi.org/10.1128/aem.01996-06. Article  CAS  PubMed Central  Google Scholar  * Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl


Environ Microbiol. 2005;71:8228–35. https://doi.org/10.1128/aem.71.12.8228-8235.2005. Article  CAS  PubMed  PubMed Central  Google Scholar  * Segata N, Izard J, Waldron L, Gevers D,


Miropolsky L, Garrett WS, et al. Metagenomic biomarker discovery and explanation. Genome Biol. 2011;12:R60. https://doi.org/10.1186/gb-2011-12-6-r60. Article  PubMed  PubMed Central  Google


Scholar  * Mandrekar JN. Receiver operating characteristic curve in diagnostic test assessment. J Thorac Oncol. 2010;5:1315–6. https://doi.org/10.1097/JTO.0b013e3181ec173d. Article  PubMed 


Google Scholar  * Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome


Res. 2003;13:2498–504. https://doi.org/10.1101/gr.1239303. Article  CAS  PubMed  PubMed Central  Google Scholar  * Douglas GM, Maffei VJ, Zaneveld JR, Yurgel SN, Brown JR, Taylor CM, et al.


PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020;38:685–8. https://doi.org/10.1038/s41587-020-0548-6. Article  CAS  PubMed  PubMed Central  Google Scholar  * Kanehisa M,


Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28:27–30. https://doi.org/10.1093/nar/28.1.27. Article  CAS  PubMed  PubMed Central  Google Scholar  * Caspi


R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, et al. The MetaCyc database of metabolic pathways and enzymes - a 2019 update. Nucleic Acids Res. 2020;48:D445–53.


https://doi.org/10.1093/nar/gkz862. Article  CAS  PubMed  Google Scholar  * Magnúsdóttir S, Ravcheev D, de Crécy-Lagard V, Thiele I. Systematic genome assessment of B-vitamin biosynthesis


suggests co-operation among gut microbes. Front Genet. 2015;6:148. https://doi.org/10.3389/fgene.2015.00148. Article  PubMed  PubMed Central  Google Scholar  * Ulvik A, Midttun Ø, Pedersen


ER, Eussen SJ, Nygård O, Ueland PM. Evidence for increased catabolism of vitamin B-6 during systemic inflammation. Am J Clin Nutr. 2014;100:250–5. https://doi.org/10.3945/ajcn.114.083196.


Article  CAS  PubMed  Google Scholar  * Pittayanon R, Lau JT, Leontiadis GI, Tse F, Yuan Y, Surette M, et al. Differences in gut microbiota in patients with vs without inflammatory bowel


diseases: a systematic review. Gastroenterology. 2020;158:930–46.e931. https://doi.org/10.1053/j.gastro.2019.11.294. Article  PubMed  Google Scholar  * Hedin CR, McCarthy NE, Louis P,


Farquharson FM, McCartney S, Taylor K, et al. Altered intestinal microbiota and blood T cell phenotype are shared by patients with Crohn’s disease and their unaffected siblings. Gut.


2014;63:1578–86. https://doi.org/10.1136/gutjnl-2013-306226. Article  CAS  PubMed  Google Scholar  * Mulligan JH, Snell EE. Transport and metabolism of vitamin B6 in lactic acid bacteria. J


Biol Chem. 1977;252:835–9. Article  CAS  PubMed  Google Scholar  * Sokol H, Pigneur B, Watterlot L, Lakhdari O, Bermúdez-Humarán LG, Gratadoux JJ, et al. Faecalibacterium prausnitzii is an


anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA. 2008;105:16731–6. https://doi.org/10.1073/pnas.0804812105.


Article  CAS  PubMed  PubMed Central  Google Scholar  * Lavelle A, Sokol H. Gut microbiota-derived metabolites as key actors in inflammatory bowel disease. Nat Rev Gastroenterol Hepatol.


2020;17:223–37. https://doi.org/10.1038/s41575-019-0258-z. Article  PubMed  Google Scholar  * Arpaia N, Campbell C, Fan X, Dikiy S, van der Veeken J, deRoos P, et al. Metabolites produced by


commensal bacteria promote peripheral regulatory T-cell generation. Nature. 2013;504:451–5. https://doi.org/10.1038/nature12726. Article  CAS  PubMed  PubMed Central  Google Scholar  *


Maslowski KM, Vieira AT, Ng A, Kranich J, Sierro F, Yu D, et al. Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43. Nature. 2009;461:1282–6.


https://doi.org/10.1038/nature08530. Article  CAS  PubMed  PubMed Central  Google Scholar  * Li G, Lin J, Zhang C, Gao H, Lu H, Gao X, et al. Microbiota metabolite butyrate constrains


neutrophil functions and ameliorates mucosal inflammation in inflammatory bowel disease. Gut Microbes. 2021;13:1968257. https://doi.org/10.1080/19490976.2021.1968257. Article  PubMed  PubMed


Central  Google Scholar  * Sun M, Wu W, Chen L, Yang W, Huang X, Ma C, et al. Microbiota-derived short-chain fatty acids promote Th1 cell IL-10 production to maintain intestinal


homeostasis. Nat Commun. 2018;9:3555. https://doi.org/10.1038/s41467-018-05901-2. Article  PubMed  PubMed Central  Google Scholar  * Kaiko GE, Ryu SH, Koues OI, Collins PL, Solnica-Krezel L,


Pearce EJ, et al. The colonic crypt protects stem cells from microbiota-derived metabolites. Cell. 2016;165:1708–20. https://doi.org/10.1016/j.cell.2016.05.018. Article  CAS  PubMed  PubMed


Central  Google Scholar  * Koh A, De Vadder F, Kovatcheva-Datchary P, Bäckhed F. From dietary fiber to host physiology: short-chain fatty acids as key bacterial metabolites. Cell.


2016;165:1332–45. https://doi.org/10.1016/j.cell.2016.05.041. Article  CAS  PubMed  Google Scholar  * Rosenberg J, Ischebeck T, Commichau FM. Vitamin B6 metabolism in microbes and approaches


for fermentative production. Biotechnol Adv. 2017;35:31–40. https://doi.org/10.1016/j.biotechadv.2016.11.004. Article  CAS  PubMed  Google Scholar  Download references ACKNOWLEDGEMENTS The


authors are grateful to the participants for their involvement in the survey. FUNDING This work was supported by grants from the National Natural Science Foundation of China (82070562,


9194230064, 91942312 and 81800486) and the Shanghai Rising-Star Program (20QA1407700). AUTHOR INFORMATION Author notes * These authors contributed equally: Zhongsheng Feng, Jinghan Hua.


AUTHORS AND AFFILIATIONS * Center for IBD Research, Department of Gastroenterology, Shanghai Tenth People’s Hospital, Tongji University School of Medicine, Shanghai, China Zhongsheng Feng, 


Jinghan Hua, Fengjian Guo, Zhanju Liu, Yujie Zhao & Wei Wu Authors * Zhongsheng Feng View author publications You can also search for this author inPubMed Google Scholar * Jinghan Hua


View author publications You can also search for this author inPubMed Google Scholar * Fengjian Guo View author publications You can also search for this author inPubMed Google Scholar *


Zhanju Liu View author publications You can also search for this author inPubMed Google Scholar * Yujie Zhao View author publications You can also search for this author inPubMed Google


Scholar * Wei Wu View author publications You can also search for this author inPubMed Google Scholar CONTRIBUTIONS Data collation, statistical analysis and paper writing, ZF, JH and FG;


data collection, paper revision, guidance, YZ and WW; research design, funding support, paper revision and review, ZL and WW. All authors have read and agreed to the published version of the


manuscript. CORRESPONDING AUTHORS Correspondence to Yujie Zhao or Wei Wu. ETHICS DECLARATIONS COMPETING INTERESTS The authors declare no competing interests. ETHICS APPROVAL AND CONSENT TO


PARTICIPATE The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the Institutional Review Board for Clinical Research of the Shanghai


Tenth People’s Hospital of Tongji University. Informed consent was obtained from all subjects involved in the study. ADDITIONAL INFORMATION PUBLISHER’S NOTE Springer Nature remains neutral


with regard to jurisdictional claims in published maps and institutional affiliations. SUPPLEMENTARY INFORMATION SUPPLEMENTARY MATERIAL RIGHTS AND PERMISSIONS Springer Nature or its licensor


(e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted


manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Reprints and permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Feng, Z.,


Hua, J., Guo, F. _et al._ A retrospective analysis of vitamin B6 deficiency and associated changes of gut microbes in Crohn’s disease. _Eur J Clin Nutr_ 77, 1034–1043 (2023).


https://doi.org/10.1038/s41430-023-01324-5 Download citation * Received: 26 February 2023 * Revised: 27 July 2023 * Accepted: 31 July 2023 * Published: 07 August 2023 * Issue Date: November


2023 * DOI: https://doi.org/10.1038/s41430-023-01324-5 SHARE THIS ARTICLE Anyone you share the following link with will be able to read this content: Get shareable link Sorry, a shareable


link is not currently available for this article. Copy to clipboard Provided by the Springer Nature SharedIt content-sharing initiative