Metagenomic analysis of mosquitoes from kangerlussuaq, greenland reveals a unique virome

Metagenomic analysis of mosquitoes from kangerlussuaq, greenland reveals a unique virome

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ABSTRACT Climate change is dramatically affecting vector ecology in extreme environments such as the Arctic. However, little is known about the current status of viruses of arthropod vectors


located in such northerly locations. As part of a field survey on the role of wildlife in international movement of zoonotic pathogens, we sampled mammalophilic mosquitoes near the


settlement of Kangerlussuaq, Greenland in July 2022 and July 2023 to investigate their virome. The majority of mosquitoes were identified as either _Aedes impiger_ or _Aedes nigripes_.


Metagenomic analysis of RNA extracted from species pools detected a number of novel RNA viruses belonging to a range of different virus families, including Flaviviridae, Orthomyxoviridae,


Bunyavirales, Totiviridae and Rhabdoviridae. However, the sequence identities when compared to previously published, were as low as 34% at the amino acid level. Furthermore, a comparison of


virome diversity between _Aedes_ species emphasises the uniqueness of both _Aedes impiger_ and _Aedes nigripes_ from this secluded ecosystem. It also highlights the need to better understand


the viromes of potential pathogen vectors as the impacts of climate change are experienced in such northerly ecosystems. SIMILAR CONTENT BEING VIEWED BY OTHERS CHARACTERIZING VIRAL SPECIES


IN MOSQUITOES (CULICIDAE) IN THE COLOMBIAN ORINOCO: INSIGHTS FROM A PRELIMINARY METAGENOMIC STUDY Article Open access 12 December 2023 CHARACTERIZATION OF THE VIROME ASSOCIATED WITH


_HAEMAGOGUS_ MOSQUITOES IN TRINIDAD, WEST INDIES Article Open access 16 August 2021 IDENTIFICATION OF A NEWLY DISCOVERED VIRUS FROM CULEX AND ARMIGERES MOSQUITOES IN CHINA Article Open


access 29 October 2024 INTRODUCTION Global changes in climate are causing a shift in the distribution of vectors1 and increasing the likelihood of vector-borne disease outbreaks in regions


that have not experienced such disease emergence2,3. Yet, very little is known about the vectorial capacity and virome of mosquitoes in less accessible areas such as the Arctic. In addition


to a potential change in the localisation of Arctic insects in the long term, climate change already affects vectors in their current locations. With rapid environmental change, and warming


at twice the global average4 the ecology of Arctic insects will be dramatically affected. Arctic insects have uniquely adapted to long, cold winters and short, cool, unpredictable summers5.


Despite this, mosquito species have established in Arctic locations and are voracious feeders readily feeding on humans if present6. Due to the different ways a warming climate will affect


the microclimate that they inhabit, the interplay of factors impacting Arctic mosquitoes can be complex. How climate change exactly impacts the vector ecology in the Arctic is therefore hard


to predict. Nevertheless, we can be sure that all aspects of the Arctic insect life will be affected, including survival, development time, life cycle, host-seeking activity, interactions


with other species, and range expansions6. This necessarily comes with implications for the entirety of northern ecosystems as well as the importance of Arctic mosquitoes as disease vectors.


Additionally, a warming climate might also favour species introduction into the Arctic through an increase in tourism and travel, causing additional concerns around the implications of the


diseases they carry for the local ecosystems and indigenous populations7,8. Newly arriving diseases could disproportionally impact Greenland’s wildlife, because their populations are likely


immunologically naïve9. Metagenomic analysis based on mass sequencing is an established methodology for determining the virome of arthropod species10. This approach has been used extensively


for analysis of the viral composition of mosquito species associated with pathogen transmission, particularly those within the genus _Aedes_11,12,13,14. Understanding the diversity of the


mosquito virome is a critical first step that can determine the relationship between known pathogens and the insect-only virus composition of mosquitoes that in turn could lead to novel


strategies of control of mosquito-borne disease15. However, studies of the virome of indigenous mosquito species in extreme northernly locations have been limited16,17. The aim of this study


was to explore the virome of the local mosquito population in Greenland, applying a metagenomics approach. The few studies conducted in Greenland so far identified _Aedes nigripes_


(Zetterstedt, 1838) and _Aedes impiger_ (Walker, 1848) as the main native mosquito species18, but did not detect any arthropod-vectored viruses19,20. However, exploring the entirety of the


mosquito virome, including both insect specific viruses as well as potential arboviruses will enable us to better understand the risks a change in location of Arctic mosquitoes might


harbour, but even more importantly, take us one step closer to estimating the vector competence of so far understudied mosquito species for relevant virus families. Our study highlights the


importance of exploring the virome in secluded locations such as the Arctic as climate change is already causing dramatic changes in species distribution that is accompanied by a shift in


pathogen localisation. MATERIALS AND METHODS MOSQUITO COLLECTION Mosquitoes were trapped at an open air camp at lake Sanningasoq, approximately 11.5 km northeast from Kangerlussuaq (67°01’N


50°41’W) in central-western Greenland (Fig. 1a), from 05.07. to 25.07.2022 (14 sampling days) and from 04.07. to 22.07.2023 (seven sampling days) using aspirators (Tubular suction aspirator,


7 mm intake, model D-601, Entomopraxis, Barcelona). They were killed by pipe smoke and kept at low temperature by immersing the collection tubes in a lake (estimated temperature between 3


ºC and 6 ºC). To prevent nucleic acid degradation, in 2023 a total of 70 mosquitoes were instantly homogenised individually in DNA/RNA Shield (Zymo) after trapping by shaking them in a 1.5


ml Eppendorf tube with a 5 mm stainless steel bead (Qiagen, Manchester, UK). MORPHOLOGICAL IDENTIFICATION OF MOSQUITOES Mosquito species identification by morphology was carried out under a


microscope (Leica M165 C) following the guide by Danks and Corbet18. For _Aedes nigripes_ the tarsal claw curves gradually, while for _Aedes (A) impiger_ the tarsal claw curves abruptly


(Fig. 1B). MOLECULAR IDENTIFICATION OF MOSQUITOES To confirm the morphological species identification and to identify specimens where the tarsal claws were missing, cytochrome c oxidase I


(_cox_1) sequences were obtained. In the pilot project i.e., mosquitoes trapped in 2022, two legs were used to extract DNA for species identification by DNA barcoding. Total DNA was


extracted using DNeasy kits (Qiagen, Manchester, UK) according to the manufacturer’s instructions. Mosquitoes were then homogenised individually in 350 µl tissue culture medium using the


Qiagen TissueLyser II with 5 mm stainless steel beads (both Qiagen, Manchester, UK) and centrifuged (10,000 rpm/10 min). Total RNA was extracted from 250 µl of the supernatant using RNeasy


kits (Qiagen, Manchester, UK). The precipitated RNA was resuspended in 40 µl nuclease free water and pooled by species and date for next generation sequencing (NGS). In 2023, to prevent


nucleic acid degradation, mosquitoes were homogenised individually in DNA/RNA Shield (Zymo) immediately after trapping. DNA and RNA were then extracted separately using the AllPrep DNA/RNA


Mini Kit (Qiagen, Manchester, UK). The precipitated DNA and RNA were resuspended in 40 µl nuclease free water. DNA was used for species identification by DNA barcoding and RNA was later


pooled by species and sampling date for further analysis by NGS. A 658 bp region located at the 5’ end of the _cox_1 gene was amplified by PCR with the primer pair (LCO1490 and HCO2198)


published by Folmer et al.21. PCR products were visualised on a 1.5% agarose gel and samples of the correct band size were submitted for Sanger sequencing using primers LC01490 and HCO2198.


Mosquito species were identified following a BLASTN search. Sequence identities were > 99% when compared with published Aedes impiger (Genbank: JN303080) and Aedes nigripes (Genbank:


KR395472) sequences. NEXT GENERATION SEQUENCING Extracted mosquito RNA was pooled based on species and date of trapping and subjected to next generation sequencing for metagenomic analysis


(Supplementary Tables 1 and 2). Sequencing libraries were prepared using the Nextera XT kit (Illumina, Cambridge, UK) and analysed on a NextSeq sequencer (Illumina, Cambridge, UK) with 2 ×


150 base paired-end reads. DATA ANALYSIS Reads were analysed using the Chan Zuckerberg Illumina pipeline22, a cloud-based, open-source bioinformatics platform: Reads were aligned against


NCBI NT and NR databases using Minimap2 and Diamond, contigs were assembled with SPAdes, reads mapped against contigs using Bowtie2 and contigs aligned against nucleotide and protein


databases with BLASTN and BLASTX. According to the Chan Zuckerberg pipeline (for all projects created prior April 19, 2023), the Host Filtering and Quality Control steps included initial


host filtration using STAR, trimming of sequencing adapters using Trimmomatic, quality filtering using PriceSeq, identification of duplicate reads using czid-dedup, filtering out of low


complexity sequences using LZW, filtering out remaining host sequences using Bowtie2, subsampling to 1 million fragments (reads/read-pairs) if > 1 M remain after step, and filtering out


human sequences, regardless of host (using STAR, Bowtie2, and GSNAP). Details of the total reads per sample, the percentage that passed QC, duplicate compression ratio (DCR) and the number


of reads that remained after host filtering can be found in Supplementary Table 3. Hits that produced a minimum of one contig were investigated further. If multiple contigs were recovered


from the same virus, the longest contig was investigated further. The map depicting the trapping location was produced with ggplot2 (version 3.5.1) in R (version 4.4.1). The bubble blots in


Fig. 2 were made with ggplot2 (version 3.5.1) in R (version 4.4.1). Sequence alignments (Fig. 3) were produced using MAFFT v7.471 and the resulting alignment was imported into BEAST


(v1.10.4). A Bayesian phylogenetic tree was produced using the Blosum62 amino acid substitution model and 10,000,000 Markov chain Monte Carlo generations. Log files were analysed in Tracer


v1.7.1 to check the effective sample size and a 10% burn-in was included (TreeAnnotator v.1.10.4) before being visualised and annotated in FigTree v1.4.4. For the heatmap in Fig. 4 a list of


viruses for all assigned reads (BLASTX) for both _A. nigripes_ and _A. impiger_ was added to the database assembled by Moonen et al.23. Detections versus non-detections for all viruses and


_Aedes_ species in the database were calculated with Tidyverse (version 1.3.1) in R (version 4.4.1). A heatmap was created with GraphPad Prism (version 8.4.2). RESULTS AEDES IMPIGER WAS THE


DOMINANT SPECIES COLLECTED IN KANGERLUSSUAQ Previous surveys in western Greenland suggested that _A. nigripes_ was the only mosquito species present19. In July 2022 and July 2023, we trapped


a total of 75 and 70 specimen, respectively, near Kangerlussuaq (Fig. 1a and b). The mosquitoes trapped in 2022 served as a pilot study to assess the best methods of preservation,


transport, species identification, RNA extraction and metagenomic analysis. Species identification by morphology proved to be challenging due to the poor sample conditions after transport


and the minor visible differences between the most common species described for Greenland (Fig. 1c). Species identification using the _cox_1 partial sequence, effectively discriminated the


species present provided the quality of extracted nucleic acids was high. This identified the majority of mosquitoes collected in 2022 as _Aedes impiger_. Of the 75 Diptera trapped, 4 were


excluded (3 midges, 1 fly), 37 were identified as _Aedes impiger_ (52%), 5 as _Aedes nigripes_ (7%), with the remaining 29 samples unidentifiable, due to poor DNA quality and failure to


amplify the _cox_1 amplicon. Consequently, all mosquitoes sampled in 2023, (_n_ = 70) were individually homogenised in DNA/RNA Shield immediately after trapping. This improved the quality of


the nucleic acid extracted after transport, leading to 93% of samples identifiable by DNA barcoding (Fig. 1c). 49 mosquitoes were identified as _A. impiger_ (70%) and 16 as _A. nigripes_


(23%). No other mosquito species were identified in either field survey. VIRUS DIVERSITY IN ARCTIC MOSQUITOES Mosquitoes were pooled based on sampling date and species (Supplementary Tables


1 and 2) and submitted to NGS. The majority of reads from specimens trapped in 2022 mapped to host and bacterial genomes, due to poor nucleic acid quality caused by the challenging storage


and transport conditions. For mosquitoes trapped in 2023, the majority of reads mapped to eukaryotes and bacteria (Fig. 2a). However, a proportion of reads mapped to a variety of virus


families representing positive and negative single-stranded RNA viruses, double-stranded RNA viruses as well as retroviruses (Fig. 2b). Many of the sequences mapped to viruses that have no


assigned order or family, others to assigned virus families but with no ascribed genus. The highest percentage of virus reads for both _A. impiger_ and _A. nigripes_ mapped to non-genus


specific reads in the _Totiviridae_, _Chrysoviridae_ and _Flaviviridae_ families. Most virus families were detected consistently through the sampling period. However, certain virus families,


for example Orthophasmavirus, were only detected in a single mosquito pool. Although the identified virus families significantly overlapped between _A. nigripes_ and _A. impiger_,


especially in the top 15 virus families detected (including 90% and 99% of total viral reads, depending on sampling date and species), they also encompassed their own individual virome


footprint (Fig. 2c). PHYLOGENETIC ANALYSIS REVEALS THE IDENTIFICATION OF NOVEL VIRUSES Sequences mapping to those virus families comprising virus species with known zoonotic potential were


analysed phylogenetically (Fig. 3, Supplementary Table 4). For all contigs analysed, we aimed to always phylogenetically represent the homologous sequence obtained from both _Aedes_ species.


In few cases this led to contigs of sizes < 1000 bp or supported by only few reads being included in the analysis (details see Supplementary Table 4). Within the family of


_Flaviviridae_, two novel flavi-like virus sequences were identified, with their polyproteins displaying 35% similarity to the nearest published polyprotein (Fig. 3). This was a flavi-like


virus derived from _Culex tritaeniorhynchus_ (Protein Accession Number: BBQ05092). Similarly, two novel orthomyxo-like sequences were identified within the family of _Orthomoyxoviridae_


(Fig. 3). Their nucleoprotein comprised only 36% identity to that of Byreska virus (Protein Accession Number: UQS95351), the nearest published sequence. Within the order of _Bunyavirales_,


we discovered two novel phasiviruses as well as two novel phasmaviruses (Fig. 3). The Phasivirus sequences shared 36% and 66% identity with nucleocapsid sequences belonging to Guadeloupe


mosquito phasivirus (Protein Accession Number: YP_010839970) and Coredo virus (Protein Accession Number: YP_010840334), respectively. Within the family _Totiviridae_, we discovered novel


nucleocapsid sequences (Fig. 3) with 68% shared amino acid sequence to Vaasa toti-like viruses (Protein Accession Number: OP019898 and OP019899) and RNA-dependent RNA polymerase with 89%


shared amino acid sequence. Within the family of Rhabdoviridae, we also discovered three distinct nucleoprotein sequences, two of which were present in both _A. nigripes_ and _A. impiger_


(Fig. 3). MOSQUITOES IN GREENLAND HOST A UNIQUE VIROME To emphasize the uniqueness of the virome of _A. impiger_ and _A. nigripes_, we compared our findings to a database of viruses


published for other _Aedes_ species (compiled by Moonen et al.23). The heatmap (Fig. 4a) reveals that the majority of sequences derived from Greenland mosquitoes were unique to _A. impiger_


and _A. nigripes_, with only 36 (of a total of 94, 38%) assigned viruses overlapping with viruses published for other _Aedes spp_. (Fig. 4b). Only 22 (23%) overlapped with _Aedes aegypti_,


the Aedes mosquito with the best characterized virome (Fig. 4b). A Two-way Anova revealed a p-value < 0.0001 for the comparison of both _A. impiger_ and _A.nigripes_ with all other


_Aedes_ species, with the exception of the comparison of _A. impiger_ with _A. cantans_ (_p_ = 0.0008). This makes the virome composition of _A. cantans_ the most similar published virome


composition to that of the mosquitoes we sampled near Kangerlussuaq. This is additionally interesting, as _A. cantans_ is geographically distributed across the Palaearctic, suggesting that


mosquitoes from similar ecological habitats might share similar viruses. DISCUSSION _Aedes nigripes_ is the most abundant and most widely distributed mosquito in the Arctic24. Despite this,


where a definitive identification could be made, _A. impiger_ was the most frequently sampled mosquito at the Kangerlussuaq site. The circumpolar distribution of _A. nigripes_ makes it the


most widespread and northernmost mosquito species in the Arctic region25. However, surprisingly little is known about the viruses harboured by this and other indigenous mosquito species. Our


study is the first metagenomic exploration of the viromes of _A. impiger_ and _A. nigripes_ in Greenland. In our study, the majority of identified virus sequences were found in both _A.


impiger_ and _A. nigripes._ They also harboured a set of sequence reads assigned to viruses that were unique to each species, implying a distinct virome, although this varied over the


sampling period. Due to our limited sample size, future studies are needed to explore the differences and similarities with the virome of other Aedes species in more depth, and to determine


how significant the virome difference between _A. impiger_ and _A. nigripes_ is. Larger datasets, including metagenomic data from other locations in Greenland will be crucial to answer


remaining questions. Since insect-specific viruses can affect the replication and transmission efficiency of zoonotic viurses, future studies should also investigate if the virome


differences observed cause functional consequences for the vector competence of A. _impiger_ and A. _nigripe_s. A consistent finding in almost all mosquito pools was the presence of


sequences with high identity with viruses detected in Finland16. These were reported to be derived from _A. excrucians_, also referred to a _Ochlerotatus excrucians_. Totiviridae sequences


have also been detected in mosquitoes in extreme northerly locations such as Western Siberia17. However, this family of double-stranded RNA viruses has been associated with a range of


arthopods including tabanid flies26 and _Culicoides_ midges27. We also found that the _A. impiger_ and _A. nigripes_ virome comprises of sequences belonging to many of the major virus


families described for other mosquito species. However, sequence identity of our assembled contigs with sequences published for other mosquito species was low, sometimes below 35% identity


at the on amino acid level. This may explain why the few studies that have previously attempted to characterise the virome of Arctic mosquitoes by PCR often failed to detect viruses19,20.


Even less is known about the vector competence of _A. impiger_ and _A. nigripes_ and the potential impact of novel viruses arriving in Arctic ecosystems or a potential change in global


distribution due to a changing climate. _Aedes nigripes_ has been suggested to transmit Getah virus in Siberia28, and there was evidence of infection with Anadyr virus and Chatanga


viruses19. _Aedes impiger_ is known to feed on humans and can productively produce eggs and oviposit after a human blood meal29. These observations indicate a realistic risk that these


Arctic mosquitoes are capable of transmitting viruses with zoonotic potential. Our findings further support the capability of _A. nigripes_ and _A. impiger_ to replicate viruses belonging to


a range of different virus families, including (-)ssRNA, (+)ssRNA, dsRNA and retroviruses. However, none of the viruses detected are closely related to known viruses with zoonotic potential


and are likely insect-specific. Further studies will need to functionally characterise the viruses we detected, with regard to their replicative capabilities, potential to cause disease and


impact on the replication and transmission of other, better characterized arboviruses. Recent publications suggest that a mosquito virome is less driven by location, but by species30. In


our study, we describe the virome of two uncharacterized mosquito species in a remote location. Consequently, we cannot know whether the unique virome we observed is driven by the isolated


location or the species assemblage, although we note that many virus sequences were present in both species. Mosquitoes currently inhabiting secluded locations, such as the Arctic, might be


susceptible to infection and transmit different viruses described in similar species if pathogens or mosquitoes are expanding or changing their distribution3. Understanding and being able to


predict which viruses will most likely be able to be transmitted by which mosquito species, based on their described virome, would help to estimate the risk of zoonotic disease transmission


and inform policies. As our heatmap shows, there are still numerous gaps in our knowledge about the virome of different Aedine mosquitoes, while most studies concentrate on only very few


species. Although it is unclear what risk the viruses assigned to the sequences we observed represent to plants, animals, or the human population, our results highlight that Arctic


mosquitoes have a distinct virome and could support replication of viruses with zoonotic potential. As a changing climate will increase the likelihood of novel viruses arriving in remote


locations and mosquitoes currently restrained to remote locations migrating into different ecosystems, this will most likely impact animal and public health. In light of the predicted


expansion of both vectors and their viruses in a changing climate, this should be considered in future risk management plans. DATA AVAILABILITY All virus contigs shown in the phylogenetic


analysis have been deposited in GenBank under accession numbers: PQ667683 - PQ667701. COX-1 sequences of Aedes impiger and A. nigripes have been deposited in GenBank under accession numbers:


PQ645069 - PQ645072. The raw sequence reads generated in this study are available at the NCBI Sequence Read Archive (SRA) database under BioProject PRJNA1230858; BioSamples SAMN47195350 -


SAMN47195360. REFERENCES * Ryan, S. J., Carlson, C. J., Mordecai, E. A. & Johnson, L. R. Global expansion and redistribution of Aedes-borne virus transmission risk with climate change.


_PLoS Negl. Trop. Dis._ 13 (3), e0007213 (2019). Article  PubMed  PubMed Central  Google Scholar  * Paz, S. Climate change impacts on vector-borne diseases in Europe: risks, predictions and


actions. _Lancet Reg. Health – Europe_ ;1. (2021). * de Souza, W. M. & Weaver, S. C. Effects of climate change and human activities on vector-borne diseases. _Nat. Rev. Microbiol._


(2024). * Post, E. et al. The Polar regions in a 2°C warmer world. _Sci. Adv._ 5 (12), eaaw9883 (2019). Article  ADS  CAS  PubMed  PubMed Central  Google Scholar  * Danks, H. V. Seasonal


adaptations in Arctic insects. _Integr. Comp. Biol._ 44 (2), 85–94 (2004). Article  PubMed  Google Scholar  * Koltz, A. M. & Culler, L. E. Biting insects in a rapidly changing Arctic.


_Curr. Opin. Insect Sci._ 47, 75–81 (2021). Article  PubMed  Google Scholar  * Chown, S. L., McGeoch, M. A. & Marshall, D. J. Diversity and conservation of invertebrates on the


sub-Antarctic Prince Edward Islands. _Afr. Entomol._ 10 (1), 67–82 (2002). Google Scholar  * Gabriel, A. G. A. et al. Biological invasions of Southern ocean Islands: the Collembola of Marion


Island as a test of generalities. _Ecography_ 24 (4), 421–430 (2001). Article  ADS  Google Scholar  * Pauchard, A. et al. Non-native and native organisms moving into high elevation and high


latitude ecosystems in an era of climate change: new challenges for ecology and conservation. _Biol. Invasions_. 18 (2), 345–353 (2016). Article  Google Scholar  * Li, C-X. et al.


Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses. _eLife_ 4, e05378 (2015). Article  PubMed  PubMed Central  Google Scholar  *


Xiao, P. et al. Metagenomic sequencing from mosquitoes in China reveals a variety of insect and human viruses. _Front. Cell. Infect. Microbiol._ ;8. (2018). * Ramos-Nino, M. E. et al. High


prevalence of Phasi Charoen-like virus from wild-caught Aedes aegypti in Grenada, W.I. As revealed by metagenomic analysis. _PLoS One_. 15 (1), e0227998 (2020). Article  CAS  PubMed  PubMed


Central  Google Scholar  * Nebbak, A. et al. Virome diversity among mosquito populations in a Sub-Urban region of Marseille, France. _Viruses_ ;13(5). (2021). * Calle-Tobón, A. et al.


Local-scale Virome depiction in Medellín, Colombia, supports significant differences between Aedes aegypti and Aedes albopictus. _PLOS ONE_. 17 (7), e0263143 (2022). Article  PubMed  PubMed


Central  Google Scholar  * Patterson, E. I., Villinger, J., Muthoni, J. N., Dobel-Ober, L. & Hughes, G. L. Exploiting insect-specific viruses as a novel strategy to control vector-borne


disease. _Curr. Opin. Insect Sci._ 39, 50–56 (2020). Article  PubMed  PubMed Central  Google Scholar  * Truong Nguyen, P. T. et al. Characterisation of the RNA Virome of nine Ochlerotatus


species in Finland. _Viruses_ ;14(7). (2022). * Ternovoi, V. A. et al. The Viromes of mosquitoes from the natural landscapes of Western Siberia. _Viruses_ ;15(9). (2023). * Danks HVaCPS. A


key to all stages of Aedes nigripes and A. impiger (Diptera: Culicidae) with a description of first-instar larvae and pupae. _Can. Entomol._ 105/3, 367–376 (1973). Article  Google Scholar  *


Müllerová, J. et al. No indication of arthropod-vectored viruses in mosquitoes (Diptera: Culicidae) collected on Greenland and Svalbard. _Polar Biol._ 41 (8), 1581–1586 (2018). Article 


Google Scholar  * Reeves, W. K., Breidenbaugh, M. S., Thomas, E. E. & Glowacki, M. N. Mosquitoes of thule air base, Greenland. _J. Am. Mosq. Control Assoc._ 29 (4), 383–384 (2013).


Article  PubMed  Google Scholar  * Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. DNA primers for amplification of mitochondrial cytochrome C oxidase subunit I from diverse


metazoan invertebrates. _Mol. Mar. Biol. Biotechnol._ 3 (5), 294–299 (1994). CAS  PubMed  Google Scholar  * Kalantar, K. L. et al. IDseq—An open source cloud-based pipeline and analysis


service for metagenomic pathogen detection and monitoring. _GigaScience_ 9 (10), giaa111 (2020). Article  PubMed  PubMed Central  Google Scholar  * Moonen, J. P., Schinkel, M., van der Most,


T., Miesen, P. & van Rij, R. P. Composition and global distribution of the mosquito virome - A comprehensive database of insect-specific viruses. _One Health_. 16, 100490 (2023).


Article  CAS  PubMed  PubMed Central  Google Scholar  * Vockeroth, J. R. Notes on the identities and distributions of Aedes species of Northern Canada, with a key to the females (Diptera:


Culicidae). _Can. Entomol._ 86 (6), 241–255 (1954). Article  Google Scholar  * Coulson, S. & Refseth, S. The terrestrial and freshwater invertebrate fauna of Svalbard (and Jan Mayen). In


_Prestrud Pål SHaGHV, Editor. A Catalogue of the Terrestrial and Marine Animals of Svalbard_ (Norwegian Polar Institute, Polar Environmental Centre, NO-9296 Tromsø, 2004). Google Scholar  *


Litov, A. G. et al. Viromes of Tabanids from Russia. _Viruses_ ;15(12). (2023). * Laredo-Tiscareño, S. V. et al. Discovery of novel viruses in Culicoides biting midges in Chihuahua, Mexico.


_Viruses_ ;16(7). (2024). * L’Vov, S. D. et al. [Mosquito-borne arboviruses in the Baikal region]. _Vopr Virusol_. 40 (4), 170–172 (1995). PubMed  Google Scholar  * Sommermann, K. M. Blood


meals and egg production of four species of Alaskan Aedes in captivity (Diptera: Culicidae). _Mosq. News_. 29 (4), 654–662 (1969). Google Scholar  * Thongsripong, P. et al. Metagenomic


shotgun sequencing reveals host species as an important driver of Virome composition in mosquitoes. _Sci. Rep._ 11 (1), 8448 (2021). Article  MathSciNet  CAS  PubMed  PubMed Central  Google


Scholar  Download references ACKNOWLEDGEMENTS We would like to thank Luis Hernandez-Triana for his advice on the DNA barcoding. Mirjam would like to thank her friends Laura and Tim for their


enthusiasm around this project and for naming her favourite _Aedes impiger _collected in 2022 Helga. Conference talks without the personal touch of Helga would not have been the same.


FUNDING This study was supported by grant SV3045 from Department for Environment, Food & Rural Affairs (Defra), Scottish Government and Welsh Government, the Versatile Emerging


Infectious Disease Observatory (VEO) [European Union’s Horizon 2020 research and innovation programme] (Grant No.874735) and Department for Environment, Food & Rural Affairs (Defra) and


UK Research and Innovation (UKRI) (EXSE0574). AUTHOR INFORMATION AUTHORS AND AFFILIATIONS * Virology Department, Animal and Plant Health Agency, Woodham Lane, Addlestone, KT15 3 NB, Surrey,


UK Mirjam Schilling, Madhujot Jagdev & Nicholas Johnson * Greenland White-fronted Goose Study group/VEO Project, Bristol, UK Huw Thomas Authors * Mirjam Schilling View author


publications You can also search for this author inPubMed Google Scholar * Madhujot Jagdev View author publications You can also search for this author inPubMed Google Scholar * Huw Thomas


View author publications You can also search for this author inPubMed Google Scholar * Nicholas Johnson View author publications You can also search for this author inPubMed Google Scholar


CONTRIBUTIONS Manuscript first draft: MS; Investigations: MS, MJ, HT; Study design and analysis: MS, NJ; Project management/supervision: HT, NJ; Manuscript review and edit: all authors.


CORRESPONDING AUTHOR Correspondence to Mirjam Schilling. ETHICS DECLARATIONS COMPETING INTERESTS The authors declare no competing interests. ETHICS STATEMENT The authors confirm that the


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ARTICLE Schilling, M., Jagdev, M., Thomas, H. _et al._ Metagenomic analysis of mosquitoes from Kangerlussuaq, Greenland reveals a unique virome. _Sci Rep_ 15, 17141 (2025).


https://doi.org/10.1038/s41598-025-01086-z Download citation * Received: 17 January 2025 * Accepted: 02 May 2025 * Published: 17 May 2025 * DOI: https://doi.org/10.1038/s41598-025-01086-z


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clipboard Provided by the Springer Nature SharedIt content-sharing initiative KEYWORDS * _Aedes impiger_ * _Aedes nigripes_ * Arctic * Climate * Vector