A bcl-xl/bcl-2 protac effectively clears senescent cells in the liver and reduces mash-driven hepatocellular carcinoma in mice

A bcl-xl/bcl-2 protac effectively clears senescent cells in the liver and reduces mash-driven hepatocellular carcinoma in mice

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ABSTRACT Accumulation of senescent cells (SnCs) plays a causative role in many age-related diseases and has also been implicated in the pathogenesis and progression of metabolic


dysfunction-associated steatotic liver disease (MASLD). Senolytics that can selectively kill SnCs have the potential to be developed as therapeutics for these diseases. Here we report the


finding that 753b, a dual BCL-xL/BCL-2 proteolysis-targeting chimera (PROTAC), acts as a potent and liver-tropic senolytic. We found that treatment with 753b selectively reduced SnCs in the


liver in aged mice and STAM mice in part due to its sequestration in the liver. Moreover, 753b treatment could effectively reduce the progression of MASLD and the development of


hepatocellular carcinoma (HCC) in STAM mice even after the mice developed substantial metabolic dysfunction-associated steatohepatitis (MASH) and hepatic fibrosis. These findings suggest


that BCL-xL/BCL-2 PROTACs have the potential to be developed as therapeutics for MASLD to reduce MASH-driven HCC. Access through your institution Buy or subscribe This is a preview of


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SURVEILLANCE AND AGEING PHENOTYPES Article 02 November 2022 TARGETING SENESCENT HEPATOCYTES FOR TREATMENT OF METABOLIC DYSFUNCTION-ASSOCIATED STEATOTIC LIVER DISEASE AND MULTI-ORGAN


DYSFUNCTION Article Open access 28 March 2025 ANTAGONIZING THE IRREVERSIBLE THROMBOMODULIN-INITIATED PROTEOLYTIC SIGNALING ALLEVIATES AGE-RELATED LIVER FIBROSIS VIA SENESCENT CELL KILLING


Article 11 May 2023 DATA AVAILABILITY Source Data and Supplementary Information are provided with this paper. All other data are available from the corresponding authors upon reasonable


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This work was supported by US National Institutes of Health (NIH) grants R01 AG063801 (G.Z. and D.Z.), R01 CA242003 (G.Z. and D.Z.), K01 AA024174 (L.P.) and R01 AA028035 (L.P.) as well as a


Children’s Miracle Research Foundation grant awarded to L.P. This research used resources of the Mays Cancer Center Drug Discovery and Structural Biology Shared Resource (NIH P30 CA054174),


the Center for Innovative Drug Discovery (CPRIT Core Facility Award RP210208 and NIST Award 60NANB24D117) and the San Antonio Nathan Shock Center (NIH P30 AG013319). We also thank M. Zeeshan


for help with senolytic testing in PACs and S. Khan and D. Lyu for their assistance with some of these studies. The experiment involving HTVi of oncogene expression plasmids was assisted by


M. McLaughlin and B. Barre. AUTHOR INFORMATION Author notes * These authors contributed equally: Yang Yang, Natacha Jn-Simon, Yonghan He. AUTHORS AND AFFILIATIONS * Department of


Biochemistry and Structural Biology, University of Texas Health Science Center, San Antonio, TX, USA Yang Yang & Daohong Zhou * Department of Pharmacology and Therapeutics, College of


Medicine, University of Florida, Gainesville, FL, USA Yang Yang * Department of Pathology, Tulane University, New Orleans, LA, USA Natacha Jn-Simon, Chunbao Sun, Tian Tian, Sreenivasulu


Basha, Xian-Ming Yin & Liya Pi * Department of Pharmacodynamics, College of Pharmacy, University of Florida, Gainesville, FL, USA Yonghan He & Daohong Zhou * Department of Medicinal


Chemistry, College of Pharmacy, University of Florida, Gainesville, FL, USA Peiyi Zhang, Wanyi Hu & Guangrong Zheng * Advanced Magnetic Resonance Imaging and Spectroscopy Facility,


University of Florida, Gainesville, FL, USA Huadong Zeng * Department of Cell Systems and Anatomy, University of Texas Health Science Center, San Antonio, TX, USA Araceli S. Huerta & 


Lu-Zhe Sun * Department of Medicine, University of Texas Health Science Center, San Antonio, TX, USA Robert Hromas Authors * Yang Yang View author publications You can also search for this


author inPubMed Google Scholar * Natacha Jn-Simon View author publications You can also search for this author inPubMed Google Scholar * Yonghan He View author publications You can also


search for this author inPubMed Google Scholar * Chunbao Sun View author publications You can also search for this author inPubMed Google Scholar * Peiyi Zhang View author publications You


can also search for this author inPubMed Google Scholar * Wanyi Hu View author publications You can also search for this author inPubMed Google Scholar * Tian Tian View author publications


You can also search for this author inPubMed Google Scholar * Huadong Zeng View author publications You can also search for this author inPubMed Google Scholar * Sreenivasulu Basha View


author publications You can also search for this author inPubMed Google Scholar * Araceli S. Huerta View author publications You can also search for this author inPubMed Google Scholar *


Lu-Zhe Sun View author publications You can also search for this author inPubMed Google Scholar * Xian-Ming Yin View author publications You can also search for this author inPubMed Google


Scholar * Robert Hromas View author publications You can also search for this author inPubMed Google Scholar * Guangrong Zheng View author publications You can also search for this author


inPubMed Google Scholar * Liya Pi View author publications You can also search for this author inPubMed Google Scholar * Daohong Zhou View author publications You can also search for this


author inPubMed Google Scholar CONTRIBUTIONS L.P. and D.Z. made equal contributions to developing concepts and strategies in this study. Methodologies and techniques used in this study were


mainly carried out by Y.Y., N.J.-S., Y.H., C.S., T.T., S.B. and L.P. Additional MRI for liver cancer imaging was performed by C.S., H.Z. and L.P. Synthesis and characterization of 753b was


done by P.Z. and W.H., under the supervision of G.Z. Characterization of 753b senolytic activity in vitro and in naturally aged mice was done by Y.Y. and Y.H., under the supervision of D.Z.


The STAM mouse model studies were done by N.J.-S., C.S., T.T. and S.B., under the supervision of L.P., and Y.Y. contributed to some of the analyses of hepatic senescence and fibrosis, under


the supervision of D.Z. HTVi-induced HCC mouse model study was done by A.S.H., under the supervision of L.-Z.S. Writing of the original draft was performed by Y.Y., Y.H., L.P. and D.Z.


X.-M.Y. and R.H. were involved in experimental design and data interpretation. Review and editing of the paper was performed by all authors. CORRESPONDING AUTHORS Correspondence to Liya Pi


or Daohong Zhou. ETHICS DECLARATIONS COMPETING INTERESTS Y.Y., Y.H., P.Z., W.H., G.Z., L.P. and D.Z. are inventors on patents for the use of BCL-xL PROTACs as anti-tumor agents and


senolytics. R.H., G.Z. and D.Z. are cofounders of and have equity in Dialectic Therapeutics, which develops BCL-xL/2 PROTACs to treat cancer. The other authors declare no competing


interests. PEER REVIEW PEER REVIEW INFORMATION _Nature Aging_ thanks Thomas Bird and the other, anonymous, reviewer(s) for their contribution to the peer review of this work. ADDITIONAL


INFORMATION PUBLISHER’S NOTE Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. EXTENDED DATA EXTENDED DATA FIG. 1


EVALUATION OF 753B-INDUCED DEGRADATION OF THE BCL-2 FAMILY PROTEINS IN WI-38 CELLS AND 753B SENOLYTIC ACTIVITY AGAINST RENAL EPITHELIAL CELLS (RECS), HUMAN UMBILICAL VEIN ENDOTHELIAL CELLS


(HUVECS), AND PREADIPOCYTES (PACS) _IN VITRO._ A. Representative western blotting images of the levels of BCL-xL, BCL-2, BCL-w, MCL-1, and von Hippel-Lindau (VHL) in NC WI-38 cells after


they were treated with increasing concentrations of 753b in a cell culture for 24 h. B. Densitometric analyses of BCL-xL, BCL-2, BCL-w, and MCL-1 expression in NC WI-38 cells from A are


presented. DC50, drug concentration causing 50% degradation of protein of interest; _D_max, the maximum level of degradation of protein of interest. C. The levels of VHL, BCL-xL, BCL-2,


BCL-w, and MCL-1 in NC and IR-SnC WI-38 cells and human platelets (PLTs) from three donors (P1-3) were detected by western blotting. Similar results from NC and IR-SnC WI-38 cells were


observed in a separate assay. D-E. Cell viability analyses show that 753b is more potent than ABT263 against IR-SnC and REP-SnC REC (D) and HUVEC (E) but less toxic to their non-senescent


counterparts. The viability of NC, IR-SnC and REP-SnC REC and HUVEC was determined 72 h after treatment with increasing concentrations of ABT263 and 753b. EC50, half-maximal effective


concentration. The data presented are mean ± SD (n = 6 technical replicates) of a representative assay. EC50, half-maximal effective concentration. F & G. Cell viability analyses show


that 753b is not senolytic, but dasatinib and quercetin (D + Q) are, against IR-SnC PAC. The viability of IR-SnC PAC was determined 72 h after treatment with increasing concentrations of


ABT263 and 753b (F), or with vehicle (VEH), low D + Q (1 μM D plus 20 μM Q) and high D + Q (10 μM D plus 200 μM Q) (G). The data presented are mean ± SD (n = 3 technical replicates) of a


representative assay. β-actin was used as a loading control in A and C. Source data EXTENDED DATA FIG. 2 753B HAS NO EFFECT ON THE LEVELS OF _CDKN2A_ EXPRESSION IN THE LUNG, KIDNEY AND FAT


TISSUES BUT REDUCES HEPATIC EXPRESSION OF SASP FACTORS IN NATURALLY AGED MICE. A. The levels of _Cdkn2a_ mRNA in the lung, kidney and inguinal fat from untreated young mice and naturally


aged mice treated with VEH and 753b. B. The levels of _Cxcl12_, _Ccl5_, _Ccl2_, _Cxcl10_, _Mmp3_, _Mmp13_, _Il6_, _Il1a_, _Tnfa_, and _Tnfsf11_ in the liver tissue from untreated young mice


and naturally aged mice treated with VEH and 753b. The data are presented as means ± SEM (n = 7, 6, and 7 mice per group for young mice, VEH- and 753b-treated aged mice, respectively) and


were analyzed by one-way ANOVAs with Šídák’s multiple comparisons test or Tukey’s multiple comparisons test. Source data EXTENDED DATA FIG. 3 753B REDUCES SPLENIC EXPRESSION OF SASP FACTORS


IN NATURALLY AGED MICE. The levels of _Il1b, Serpine1, Mmp3, Mmp13, Cxcl12, Ccl5, Ccl2, Cxcl10, Il6, Il1a, Tnfa_, and _Tnfsf11_ in the spleens from untreated young mice and naturally aged


mice treated with VEH and 753b. The data are presented as means ± SEM (n = 8, 6, and 7 mice per group for young mice, VEH- and 753b-treated aged mice, respectively) and were analyzed by


one-way ANOVAs with Šídák’s multiple comparisons test or Tukey’s multiple comparisons test. Source data EXTENDED DATA FIG. 4 CHARACTERIZATION OF SNCS IN THE LIVER FROM STAM MICE AND


ADDITIONAL EVALUATIONS OF 753B TREATMENT ON STAM MICE. A. A cartoon indicates distribution of zone 1, 2, and 3 hepatocytes in liver lobules along with blood flow across the periportal to


pericentral axis. Periportal hepatocytes are in zone 1 that consists of portal veins, hepatic arteries, and bile ducts. B-C. SA-β-gal staining was combined with immunohistochemistry to


characterize types of SnCs in the livers from STAM mice 8 weeks after STZ and 4 weeks after HFD. Antibodies against the pericentral hepatocyte marker Cyp2E1 (B), periportal hepatocyte marker


GP6Cα (C), hepatocyte marker HNF4α (D), and biliary epithelial cell marker CK19 (E) were used for the stainings. Representative images of the stainings are presented on the left (scale bar


= 100 µm) and higher magnification images of the marked area on the left images are presented on the right for C-E. Data presented in A-E are from one representative experiment and three


independent experiments were performed with similar results. F. The levels of _Cdkna1_ mRNA in the tumor free liver tissues from VEH-treated and 753b-treated STAM mice on P150. The data are


presented as means ± SEM (n = 5 mice/group) and were analyzed by a two-tailed, unpaired Student’s _t_-test. G. The levels of selected SASP mRNA in the tumor free liver tissues from STAM mice


on P150. The data are presented as means ± SEM (n = 2 and 3 mice for VEH and 753b group, respectively) and were analyzed by a two-tailed, unpaired _t_-tests. H. Photo of reprentative


VEH-treated and 753b-treated STAM mice on P150. I. Whole body weight of STAM mice on P150. Data are presented as means ± SEM (n = 5 mice per group) and were analyzed by a two-tailed,


unpaired Student’s _t_-test. J. Blood levels of glucose in VEH- and 753b-treated STAM mice after IP injection of insulin one week before the termination of the experiment on P150. Data are


presented as means ± SEM (n = 5 mice per group) and analyzed by two-way ANOVA. Source data EXTENDED DATA FIG. 5 Diagram illustrating the time-dependent progression of NAFLD and development


of HCC in STAM mice and different 753b treatment schedules and their effects on HCC development and progression. EXTENDED DATA FIG. 6 THE EFFECTS OF EARLY AND DELAYED TREATMENTS WITH 753B ON


THE SELECTIVE MARKERS OF HEPATIC INFLAMMATION, NECROPTOSIS, AND MACROPHASE ACTIVATION IN THE LIVERS FROM STAM MICE. A. The levels of _Ccl2, Ccl5, Mlkl, Ripk3_, and _Itgax/Cd11c_ mRNA in the


tumor free liver tissues from STAM mice on P150 after receiving earlier VEH or 753b treatment as shown in Fig. 6a. The data are presented in A as means ± SEM (n = 5 mice/group) and were


analyzed by a two-tailed, unpaired Student’s _t_-tests. B. Western blotting image of αSMA and Type 1 procollagen in the tumor free liver tissues (left panel), and that of Gpc3 expression in


the whole liver tissues (right panel), from STAM mice on P150 after receiving delayed VEH or 753b treatment as shown in Fig. 7a. C. The levels of _Ccl2, Ccl5, Il6_, _Serpine1_, _Mmp3_,


_Mmp13_, _Mlkl_, _Ripk3_, and _Itgax/Cd11c_ mRNA in the tumor free liver tissues from STAM mice on P150 after receiving delayed VEH or 753b treatment as shown in Fig. 7a. The data are


presented in C as means ± SEM (n = 5 mice/group) and were analyzed by a two-tailed, unpaired Student’s _t_-tests. Source data EXTENDED DATA FIG. 7 753B IS NOT CYTOTOXIC TO HCC CELLS _IN


VITRO._ A. Cell viability of human HCC cells, HepG2 and Huh7, 72 h after treatment with increasing concentrations of ABT263 and 753b in cell culture. EC50, half-maximal effective


concentration. The data presented are mean ± SD (n = 6 technical replicates) of a reprentative assay. Similar results were observed in two additional assays. B. Representative western


blotting images of BCL-xL, BCL-2, BCL-w and MCL-1 in HepG2 cells after they were treated with increasing concentrations of ABT263 and 753b for 16 h. β-actin was used as a loading control.


Source data SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION Supplementary Figs. 1 and 2, Supplementary Tables 1–6 and Supplementary Materials. REPORTING SUMMARY SOURCE DATA SOURCE DATA


FIG. 1 Unprocessed western blots. SOURCE DATA FIG. 3 Unprocessed western blots. SOURCE DATA FIG. 4 Unprocessed western blots. SOURCE DATA FIG. 5 Unprocessed western blots. SOURCE DATA


EXTENDED DATA FIG. 1 Unprocessed western blots. SOURCE DATA EXTENDED DATA FIG. 6 Unprocessed western blots. SOURCE DATA EXTENDED DATA FIG. 7 Unprocessed western blots. SOURCE DATA FIG. 1


Statistical source data. SOURCE DATA FIG. 2 Statistical source data. SOURCE DATA FIG. 3 Statistical source data. SOURCE DATA FIG. 4 Statistical source data. SOURCE DATA FIG. 5 Statistical


source data. SOURCE DATA FIG. 6 Statistical source data. SOURCE DATA FIG. 7 Statistical source data. SOURCE DATA FIG. 8 Statistical source data. SOURCE DATA EXTENDED DATA FIG. 1 Statistical


source data. SOURCE DATA EXTENDED DATA FIG. 2 Statistical source data. SOURCE DATA EXTENDED DATA FIG. 3 Statistical source data. SOURCE DATA EXTENDED DATA FIG. 4 Statistical source data.


SOURCE DATA EXTENDED DATA FIG. 6 Statistical source data. SOURCE DATA EXTENDED DATA FIG. 7 Statistical source data. RIGHTS AND PERMISSIONS Springer Nature or its licensor (e.g. a society or


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this article is solely governed by the terms of such publishing agreement and applicable law. Reprints and permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Yang, Y., Jn-Simon, N., He, Y. _et


al._ A BCL-xL/BCL-2 PROTAC effectively clears senescent cells in the liver and reduces MASH-driven hepatocellular carcinoma in mice. _Nat Aging_ 5, 386–400 (2025).


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